Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs35601542 chr4:78137122 C/A 9.2E-6 117 39.75 45.87 31.72 KM Plot
THYM rs35616445 chr12:101377984 C/G 0.000122 116 39.5 49.6 28.43 KM Plot
THYM rs35627390 chr7:26638809 G/A 2.13E-8 116 41.22 37.62 6.55 KM Plot
THYM rs35629336 chr8:50120604 A/G 2.31E-10 119 46.27 50.1 25.83 KM Plot
THYM rs35657130 chr3:9838012 C/A 0.000122 115 36.03 51.53 33.25 KM Plot
THYM rs35670829 chr11:16494472 C/T 8.69E-9 119 40.67 52.22 7.15 KM Plot
THYM rs35672862 chr4:9379668 A/AT 8.91E-5 118 41.22 49.4 28.43 KM Plot
THYM rs35686525 chr11:11837719 TA/T 0.000121 117 41.77 42.82 13.35 KM Plot
THYM rs35699355 chr8:50219097 G/A 1.71E-10 119 46.43 49.75 25.83 KM Plot
THYM rs35709081 chr1:227376115 GA/G 0.000163 119 19.63 39.45 42.73 KM Plot
THYM rs35709976 chr4:187188141 G/GAT 2.5E-8 115 12.63 49.73 39.75 KM Plot
THYM rs35712620 chr12:58339695 T/C 9.4E-13 117 42.25 25.6 6 KM Plot
THYM rs35714200 chr1:210537104 A/G 0.000177 115 46.43 32.7 NA KM Plot
THYM rs35720014 chr3:52982110 A/C 0.000172 119 42.82 23.8 25.63 KM Plot
THYM rs35729421 chr4:9596660 GATC/G 7.93E-9 118 41.22 42.9 12.63 KM Plot